#!/usr/bin/perl -w
#
# dbfilevalidate.pm
# Copyright (C) 2007 by John Heidemann <johnh@isi.edu>
# $Id: 3136ba0e1e91c68aac840a76440e41e75b0e4666 $
#
# This program is distributed under terms of the GNU general
# public license, version 2. See the file COPYING
# in $dblibdir for details.
#
=head1 NAME
dbfilevalidate - insure the source input is a well-formed Fsdb file
=head1 SYNOPSIS
dbfilevalidate [-vc]
=head1 DESCRIPTION
Validates the input file to make sure it is a well-formed
fsdb file. If the file is well-formed, it outputs the whole file
and exits with a good exit code. For invalid files,
it exits with an error exit code and embedded error messages
in the stream as comments with "***" in them.
Currently this program checks for rows with missing or extra columns.
=head1 OPTIONS
=over 4
=item B<-v> or B<--errors-only>
Output only broken lines, not the whole thing.
=item B<-c> or B<--correct>
Correct errors, if possible. Pad out rows with the empty value;
truncate rows with extra values.
If errors can be corrected the program exits with a good return code.
=item C<-e E> or C<--empty E>
give value E as the value for empty (null) records
=back
=for comment
begin_standard_fsdb_options
This module also supports the standard fsdb options:
=over 4
=item B<-d>
Enable debugging output.
=item B<-i> or B<--input> InputSource
Read from InputSource, typically a file name, or C<-> for standard input,
or (if in Perl) a IO::Handle, Fsdb::IO or Fsdb::BoundedQueue objects.
=item B<-o> or B<--output> OutputDestination
Write to OutputDestination, typically a file name, or C<-> for standard output,
or (if in Perl) a IO::Handle, Fsdb::IO or Fsdb::BoundedQueue objects.
=item B<--autorun> or B<--noautorun>
By default, programs process automatically,
but Fsdb::Filter objects in Perl do not run until you invoke
the run() method.
The C<--(no)autorun> option controls that behavior within Perl.
=item B<--help>
Show help.
=item B<--man>
Show full manual.
=back
=for comment
end_standard_fsdb_options
=head1 SAMPLE USAGE
=head2 Input:
#fsdb sid cid
1 10
2
1 12
2 12
=head2 Command:
cat TEST/dbfilevalidate_ex.in | dbvalidate
=head2 Output:
#fsdb sid cid
1 10
2
# *** line above is missing field cid.
1 12
2 12
# | dbfilevalidate
=head1 SEE ALSO
L<Fsdb>.
=cut
# WARNING: This code is derived from dbfilevalidate.pm; that is the master copy.
use Fsdb::Filter::dbfilevalidate;
my $f = new Fsdb::Filter::dbfilevalidate(@ARGV);
$f->setup_run_finish; # or could just --autorun
exit 0;
=head1 AUTHOR and COPYRIGHT
Copyright (C) 1991-2008 by John Heidemann <johnh@isi.edu>
This program is distributed under terms of the GNU general
public license, version 2. See the file COPYING
with the distribution for details.
=cut
1;