shell bypass 403
package Graph::TransitiveClosure::Matrix;
use strict;
use Graph::AdjacencyMatrix;
use Graph::Matrix;
sub _new {
my ($g, $class, $opt, $want_transitive, $want_reflexive, $want_path, $want_path_vertices) = @_;
my $m = Graph::AdjacencyMatrix->new($g, %$opt);
my @V = $g->vertices;
my $am = $m->adjacency_matrix;
my $dm; # The distance matrix.
my $pm; # The predecessor matrix.
my @di;
my %di; @di{ @V } = 0..$#V;
my @ai = @{ $am->[0] };
my %ai = %{ $am->[1] };
my @pi;
my %pi;
unless ($want_transitive) {
$dm = $m->distance_matrix;
@di = @{ $dm->[0] };
%di = %{ $dm->[1] };
$pm = Graph::Matrix->new($g);
@pi = @{ $pm->[0] };
%pi = %{ $pm->[1] };
for my $u (@V) {
my $diu = $di{$u};
my $aiu = $ai{$u};
for my $v (@V) {
my $div = $di{$v};
my $aiv = $ai{$v};
next unless
# $am->get($u, $v)
vec($ai[$aiu], $aiv, 1)
;
# $dm->set($u, $v, $u eq $v ? 0 : 1)
$di[$diu]->[$div] = $u eq $v ? 0 : 1
unless
defined
# $dm->get($u, $v)
$di[$diu]->[$div]
;
$pi[$diu]->[$div] = $v unless $u eq $v;
}
}
}
# XXX (see the bits below): sometimes, being nice and clean is the
# wrong thing to do. In this case, using the public API for graph
# transitive matrices and bitmatrices makes things awfully slow.
# Instead, we go straight for the jugular of the data structures.
for my $u (@V) {
my $diu = $di{$u};
my $aiu = $ai{$u};
my $didiu = $di[$diu];
my $aiaiu = $ai[$aiu];
for my $v (@V) {
my $div = $di{$v};
my $aiv = $ai{$v};
my $didiv = $di[$div];
my $aiaiv = $ai[$aiv];
if (
# $am->get($v, $u)
vec($aiaiv, $aiu, 1)
|| ($want_reflexive && $u eq $v)) {
my $aivivo = $aiaiv;
if ($want_transitive) {
if ($want_reflexive) {
for my $w (@V) {
next if $w eq $u;
my $aiw = $ai{$w};
return 0
if vec($aiaiu, $aiw, 1) &&
!vec($aiaiv, $aiw, 1);
}
# See XXX above.
# for my $w (@V) {
# my $aiw = $ai{$w};
# if (
# # $am->get($u, $w)
# vec($aiaiu, $aiw, 1)
# || ($u eq $w)) {
# return 0
# if $u ne $w &&
# # !$am->get($v, $w)
# !vec($aiaiv, $aiw, 1)
# ;
# # $am->set($v, $w)
# vec($aiaiv, $aiw, 1) = 1
# ;
# }
# }
} else {
# See XXX above.
# for my $w (@V) {
# my $aiw = $ai{$w};
# if (
# # $am->get($u, $w)
# vec($aiaiu, $aiw, 1)
# ) {
# return 0
# if $u ne $w &&
# # !$am->get($v, $w)
# !vec($aiaiv, $aiw, 1)
# ;
# # $am->set($v, $w)
# vec($aiaiv, $aiw, 1) = 1
# ;
# }
# }
$aiaiv |= $aiaiu;
}
} else {
if ($want_reflexive) {
$aiaiv |= $aiaiu;
vec($aiaiv, $aiu, 1) = 1;
# See XXX above.
# for my $w (@V) {
# my $aiw = $ai{$w};
# if (
# # $am->get($u, $w)
# vec($aiaiu, $aiw, 1)
# || ($u eq $w)) {
# # $am->set($v, $w)
# vec($aiaiv, $aiw, 1) = 1
# ;
# }
# }
} else {
$aiaiv |= $aiaiu;
# See XXX above.
# for my $w (@V) {
# my $aiw = $ai{$w};
# if (
# # $am->get($u, $w)
# vec($aiaiu, $aiw, 1)
# ) {
# # $am->set($v, $w)
# vec($aiaiv, $aiw, 1) = 1
# ;
# }
# }
}
}
if ($aiaiv ne $aivivo) {
$ai[$aiv] = $aiaiv;
$aiaiu = $aiaiv if $u eq $v;
}
}
if ($want_path && !$want_transitive) {
for my $w (@V) {
my $aiw = $ai{$w};
next unless
# See XXX above.
# $am->get($v, $u)
vec($aiaiv, $aiu, 1)
&&
# See XXX above.
# $am->get($u, $w)
vec($aiaiu, $aiw, 1)
;
my $diw = $di{$w};
my ($d0, $d1a, $d1b);
if (defined $dm) {
# See XXX above.
# $d0 = $dm->get($v, $w);
# $d1a = $dm->get($v, $u) || 1;
# $d1b = $dm->get($u, $w) || 1;
$d0 = $didiv->[$diw];
$d1a = $didiv->[$diu] || 1;
$d1b = $didiu->[$diw] || 1;
} else {
$d1a = 1;
$d1b = 1;
}
my $d1 = $d1a + $d1b;
if (!defined $d0 || ($d1 < $d0)) {
# print "d1 = $d1a ($v, $u) + $d1b ($u, $w) = $d1 ($v, $w) (".(defined$d0?$d0:"-").")\n";
# See XXX above.
# $dm->set($v, $w, $d1);
$didiv->[$diw] = $d1;
$pi[$div]->[$diw] = $pi[$div]->[$diu]
if $want_path_vertices;
}
}
# $dm->set($u, $v, 1)
$didiu->[$div] = 1
if $u ne $v &&
# $am->get($u, $v)
vec($aiaiu, $aiv, 1)
&&
# !defined $dm->get($u, $v);
!defined $didiu->[$div];
}
}
}
return 1 if $want_transitive;
my %V; @V{ @V } = @V;
$am->[0] = \@ai;
$am->[1] = \%ai;
if (defined $dm) {
$dm->[0] = \@di;
$dm->[1] = \%di;
}
if (defined $pm) {
$pm->[0] = \@pi;
$pm->[1] = \%pi;
}
bless [ $am, $dm, $pm, \%V ], $class;
}
sub new {
my ($class, $g, %opt) = @_;
my %am_opt = (distance_matrix => 1);
if (exists $opt{attribute_name}) {
$am_opt{attribute_name} = $opt{attribute_name};
delete $opt{attribute_name};
}
if ($opt{distance_matrix}) {
$am_opt{distance_matrix} = $opt{distance_matrix};
}
delete $opt{distance_matrix};
if (exists $opt{path}) {
$opt{path_length} = $opt{path};
$opt{path_vertices} = $opt{path};
delete $opt{path};
}
my $want_path_length;
if (exists $opt{path_length}) {
$want_path_length = $opt{path_length};
delete $opt{path_length};
}
my $want_path_vertices;
if (exists $opt{path_vertices}) {
$want_path_vertices = $opt{path_vertices};
delete $opt{path_vertices};
}
my $want_reflexive;
if (exists $opt{reflexive}) {
$want_reflexive = $opt{reflexive};
delete $opt{reflexive};
}
my $want_transitive;
if (exists $opt{is_transitive}) {
$want_transitive = $opt{is_transitive};
$am_opt{is_transitive} = $want_transitive;
delete $opt{is_transitive};
}
die "Graph::TransitiveClosure::Matrix::new: Unknown options: @{[map { qq['$_' => $opt{$_}]} keys %opt]}"
if keys %opt;
$want_reflexive = 1 unless defined $want_reflexive;
my $want_path = $want_path_length || $want_path_vertices;
# $g->expect_dag if $want_path;
_new($g, $class,
\%am_opt,
$want_transitive, $want_reflexive,
$want_path, $want_path_vertices);
}
sub has_vertices {
my $tc = shift;
for my $v (@_) {
return 0 unless exists $tc->[3]->{ $v };
}
return 1;
}
sub is_reachable {
my ($tc, $u, $v) = @_;
return undef unless $tc->has_vertices($u, $v);
return 1 if $u eq $v;
$tc->[0]->get($u, $v);
}
sub is_transitive {
if (@_ == 1) { # Any graph.
__PACKAGE__->new($_[0], is_transitive => 1); # Scary.
} else { # A TC graph.
my ($tc, $u, $v) = @_;
return undef unless $tc->has_vertices($u, $v);
$tc->[0]->get($u, $v);
}
}
sub vertices {
my $tc = shift;
values %{ $tc->[3] };
}
sub path_length {
my ($tc, $u, $v) = @_;
return undef unless $tc->has_vertices($u, $v);
return 0 if $u eq $v;
$tc->[1]->get($u, $v);
}
sub path_predecessor {
my ($tc, $u, $v) = @_;
return undef if $u eq $v;
return undef unless $tc->has_vertices($u, $v);
$tc->[2]->get($u, $v);
}
sub path_vertices {
my ($tc, $u, $v) = @_;
return unless $tc->is_reachable($u, $v);
return wantarray ? () : 0 if $u eq $v;
my @v = ( $u );
while ($u ne $v) {
last unless defined($u = $tc->path_predecessor($u, $v));
push @v, $u;
}
$tc->[2]->set($u, $v, [ @v ]) if @v;
return @v;
}
1;
__END__
=pod
=head1 NAME
Graph::TransitiveClosure::Matrix - create and query transitive closure of graph
=head1 SYNOPSIS
use Graph::TransitiveClosure::Matrix;
use Graph::Directed; # or Undirected
my $g = Graph::Directed->new;
$g->add_...(); # build $g
# Compute the transitive closure matrix.
my $tcm = Graph::TransitiveClosure::Matrix->new($g);
# Being reflexive is the default,
# meaning that null transitions are included.
my $tcm = Graph::TransitiveClosure::Matrix->new($g, reflexive => 1);
$tcm->is_reachable($u, $v)
# is_reachable(u, v) is always reflexive.
$tcm->is_reachable($u, $v)
# The reflexivity of is_transitive(u, v) depends of the reflexivity
# of the transitive closure.
$tcg->is_transitive($u, $v)
my $tcm = Graph::TransitiveClosure::Matrix->new($g, path_length => 1);
my $n = $tcm->path_length($u, $v)
my $tcm = Graph::TransitiveClosure::Matrix->new($g, path_vertices => 1);
my @v = $tcm->path_vertices($u, $v)
my $tcm =
Graph::TransitiveClosure::Matrix->new($g,
attribute_name => 'length');
my $n = $tcm->path_length($u, $v)
my @v = $tcm->vertices
=head1 DESCRIPTION
You can use C<Graph::TransitiveClosure::Matrix> to compute the
transitive closure matrix of a graph and optionally also the minimum
paths (lengths and vertices) between vertices, and after that query
the transitiveness between vertices by using the C<is_reachable()> and
C<is_transitive()> methods, and the paths by using the
C<path_length()> and C<path_vertices()> methods.
If you modify the graph after computing its transitive closure,
the transitive closure and minimum paths may become invalid.
=head1 Methods
=head2 Class Methods
=over 4
=item new($g)
Construct the transitive closure matrix of the graph $g.
=item new($g, options)
Construct the transitive closure matrix of the graph $g with options
as a hash. The known options are
=over 8
=item C<attribute_name> => I<attribute_name>
By default the edge attribute used for distance is C<w>. You can
change that by giving another attribute name with the C<attribute_name>
attribute to the new() constructor.
=item reflexive => boolean
By default the transitive closure matrix is not reflexive: that is,
the adjacency matrix has zeroes on the diagonal. To have ones on
the diagonal, use true for the C<reflexive> option.
B<NOTE>: this behaviour has changed from Graph 0.2xxx: transitive
closure graphs were by default reflexive.
=item path_length => boolean
By default the path lengths are not computed, only the boolean transitivity.
By using true for C<path_length> also the path lengths will be computed,
they can be retrieved using the path_length() method.
=item path_vertices => boolean
By default the paths are not computed, only the boolean transitivity.
By using true for C<path_vertices> also the paths will be computed,
they can be retrieved using the path_vertices() method.
=back
=back
=head2 Object Methods
=over 4
=item is_reachable($u, $v)
Return true if the vertex $v is reachable from the vertex $u,
or false if not.
=item path_length($u, $v)
Return the minimum path length from the vertex $u to the vertex $v,
or undef if there is no such path.
=item path_vertices($u, $v)
Return the minimum path (as a list of vertices) from the vertex $u to
the vertex $v, or an empty list if there is no such path, OR also return
an empty list if $u equals $v.
=item has_vertices($u, $v, ...)
Return true if the transitive closure matrix has all the listed vertices,
false if not.
=item is_transitive($u, $v)
Return true if the vertex $v is transitively reachable from the vertex $u,
false if not.
=item vertices
Return the list of vertices in the transitive closure matrix.
=item path_predecessor
Return the predecessor of vertex $v in the transitive closure path
going back to vertex $u.
=back
=head1 RETURN VALUES
For path_length() the return value will be the sum of the appropriate
attributes on the edges of the path, C<weight> by default. If no
attribute has been set, one (1) will be assumed.
If you try to ask about vertices not in the graph, undefs and empty
lists will be returned.
=head1 ALGORITHM
The transitive closure algorithm used is Warshall and Floyd-Warshall
for the minimum paths, which is O(V**3) in time, and the returned
matrices are O(V**2) in space.
=head1 SEE ALSO
L<Graph::AdjacencyMatrix>
=head1 AUTHOR AND COPYRIGHT
Jarkko Hietaniemi F<jhi@iki.fi>
=head1 LICENSE
This module is licensed under the same terms as Perl itself.
=cut